popcorn
Overview
| Field |
Value |
| Format key |
popcorn |
| Spec file |
formats/popcorn.json |
| Cite name |
Popcorn |
| Version |
20230807 |
| Source |
https://github.com/brielin/Popcorn |
| GitHub |
https://github.com/brielin/Popcorn |
| Citation |
Brown, B. C., Ye, C. J., Price, A. L., & Zaitlen, N. (2016). Transethnic genetic-correlation estimates from summary statistics. The American Journal of Human Genetics, 99(1), 76-88. |
| ## File layout |
|
| Field |
Value |
| Column order |
rsid, A1, A2, N, beta, SE, OR, p-value, Z, AF |
| ## Column mapping |
|
| Raw header |
Canonical |
A1 |
NEA |
A2 |
EA |
AF |
EAF |
beta |
BETA |
N |
N |
OR |
OR |
p-value |
P |
rsid |
rsID |
SE |
SE |
Z |
Z |
| ## Coverage |
|
7/9 tier groups satisfied.
| Tier |
Status |
Matched |
Missing |
| Variant ID |
yes |
rsID |
SNPID |
| Genomic location |
no |
— |
CHR, POS |
| Effect / other allele |
yes |
EA, NEA |
— |
| Effect size |
yes |
BETA, OR, Z |
HR |
| Uncertainty |
yes |
SE |
— |
| P-value |
yes |
P |
MLOG10P |
| Sample size |
yes |
N |
N_CASE |
| Allele frequency |
yes |
EAF |
MAF, NEAF |
| Imputation / QC |
no |
— |
INFO |
| ## See also |
|
|
|