Overview
| Field |
Value |
| Format key |
metal |
| Spec file |
formats/metal.json |
| Cite name |
METAL |
| Version |
20220726 |
| Source |
https://genome.sph.umich.edu/wiki/METAL_Documentation |
| Citation |
Willer, C. J., Li, Y., & Abecasis, G. R. (2010). METAL: fast and efficient meta-analysis of genomewide association scans. Bioinformatics, 26(17), 2190-2191. |
| ## Column mapping |
|
| Raw header |
Canonical |
Allele1 |
EA |
Allele2 |
NEA |
Direction |
DIRECTION |
Effect |
BETA |
Freq1 |
EAF |
MarkerName |
SNPID |
P-value |
P |
StdErr |
SE |
| ## Coverage |
|
6/9 tier groups satisfied.
| Tier |
Status |
Matched |
Missing |
| Variant ID |
yes |
SNPID |
rsID |
| Genomic location |
no |
— |
CHR, POS |
| Effect / other allele |
yes |
EA, NEA |
— |
| Effect size |
yes |
BETA |
OR, HR, Z |
| Uncertainty |
yes |
SE |
— |
| P-value |
yes |
P |
MLOG10P |
| Sample size |
no |
— |
N, N_CASE |
| Allele frequency |
yes |
EAF |
MAF, NEAF |
| Imputation / QC |
no |
— |
INFO |
| ## See also |
|
|
|