gwaslab
Overview
| Field |
Value |
| Separator |
TAB |
| Header row |
yes |
| ## Column mapping |
|
| Raw header |
Canonical |
ALT |
ALT |
BETA |
BETA |
CHISQ |
CHISQ |
CHR |
CHR |
DIRECTION |
DIRECTION |
DOF |
DOF |
EA |
EA |
EAF |
EAF |
F |
F |
HR |
HR |
HR_95L |
HR_95L |
HR_95U |
HR_95U |
I2 |
I2 |
INFO |
INFO |
MAF |
MAF |
MLOG10P |
MLOG10P |
N |
N |
N_CASE |
N_CASE |
N_CONTROL |
N_CONTROL |
NEA |
NEA |
OR |
OR |
OR_95L |
OR_95L |
OR_95U |
OR_95U |
P |
P |
P_HET |
P_HET |
POS |
POS |
REF |
REF |
rsID |
rsID |
SE |
SE |
SNPID |
SNPID |
SNPR2 |
SNPR2 |
STATUS |
STATUS |
T |
T |
Z |
Z |
| ## Coverage |
|
9/9 tier groups satisfied.
| Tier |
Status |
Matched |
Missing |
| Variant ID |
yes |
SNPID, rsID |
— |
| Genomic location |
yes |
CHR, POS |
— |
| Effect / other allele |
yes |
EA, NEA |
— |
| Effect size |
yes |
BETA, OR, HR, Z |
— |
| Uncertainty |
yes |
SE |
— |
| P-value |
yes |
P, MLOG10P |
— |
| Sample size |
yes |
N, N_CASE |
— |
| Allele frequency |
yes |
EAF, MAF |
NEAF |
| Imputation / QC |
yes |
INFO |
— |
| ## See also |
|
|
|