Formats¶

Browse GWAS summary-statistics format specifications. Each page lists metadata, column mappings to GWASLab canonical headers, and tier coverage.

For a heatmap view, see the Format summary.

All formats (61)¶

• .assoc — plink_assoc
• .assoc.dosage — plink_dosage
• .assoc.fisher — plink_fisher
• .assoc.linear — plink_linear
• .assoc.logistic — plink_logistic
• .bim — plink_bim
• .fam — plink_fam
• .glm.firth — plink2_firth
• .glm.linear — plink2_linear
• .glm.logistic — plink2_logistic
• .psam — plink_psam
• .pvar — plink_pvar
• .sample — bgen_sample
• .stats — bolt_lmm
• auto — auto
• auto_0 — auto_0
• auto_0_neaf — auto_0_neaf
• auto_0_ref — auto_0_ref
• auto_0_ref_neaf — auto_0_ref_neaf
• auto_1_ref — auto_1_ref
• auto_1_ref_neaf — auto_1_ref_neaf
• auto_2 — auto_2
• auto_2_neaf — auto_2_neaf
• auto_2_ref — auto_2_ref
• auto_2_ref_neaf — auto_2_ref_neaf
• auto_neaf — auto_neaf
• auto_raw — auto_raw
• auto_ref — auto_ref
• auto_ref_neaf — auto_ref_neaf
• bgenie — bgenie
• CCGWAS — ccgwas
• cojo — cojo
• fastgwa — fastgwa
• gemma — gemma
• genomicSEM — genomicsem
• gwascatalog — gwascatalog
• gwascatalog_hm — gwascatalog_hm
• gwaslab — gwaslab
• ldak — ldak
• ldsc — ldsc
• MESuSiE — mesusie
• metal — metal
• mrmega — mrmega
• mtag — mtag
• pgscatalog — pgscatalog
• pgscatalog_hm Harmonized File — pgscatalog_hm
• pheweb — pheweb
• plink1_assoc_outputs — plink
• plink2_glm_outputs — plink2
• popcorn — popcorn
• regenie — regenie
• regenie_gene — regenie_gene
• saige — saige
• snptest — snptest
• ssf — ssf
• tensorqtl_cis — tensorqtl_cis
• tensorqtl_cis_independent — tensorqtl_cis_independent
• tensorqtl_cis_nominal — tensorqtl_cis_nominal
• tensorqtl_cis_nominal_interaction — tensorqtl_cis_nominal_interaction
• tensorqtl_trans — tensorqtl_trans
• vcf — vcf