MESuSiE
Overview
| Field |
Value |
| Format key |
mesusie |
| Spec file |
formats/mesusie.json |
| Cite name |
MESuSiE |
| Version |
20221109 |
| Source |
https://borangao.github.io/meSuSie_Analysis/ |
| GitHub |
https://github.com/borangao/MESuSiE |
| Citation |
Gao, B., & Zhou, X. (2024). MESuSiE enables scalable and powerful multi-ancestry fine-mapping of causal variants in genome-wide association studies. Nature Genetics, 56(1), 170-179. |
| ## Column mapping |
|
| Raw header |
Canonical |
Beta |
BETA |
N |
N |
POS |
POS |
Se |
SE |
SNP |
SNPID |
Z |
Z |
| ## Coverage |
|
4/9 tier groups satisfied.
| Tier |
Status |
Matched |
Missing |
| Variant ID |
yes |
SNPID |
rsID |
| Genomic location |
partial |
POS |
CHR |
| Effect / other allele |
no |
— |
EA, NEA |
| Effect size |
yes |
BETA, Z |
OR, HR |
| Uncertainty |
yes |
SE |
— |
| P-value |
no |
— |
P, MLOG10P |
| Sample size |
yes |
N |
N_CASE |
| Allele frequency |
no |
— |
EAF, MAF, NEAF |
| Imputation / QC |
no |
— |
INFO |
| ## See also |
|
|
|