mrmega
Overview
| Field |
Value |
| Format key |
mrmega |
| Spec file |
formats/mrmega.json |
| Cite name |
MR-MEGA |
| Version |
ver0.2 |
| Last checked |
20220806 |
| Source |
https://genomics.ut.ee/en/tools |
| Citation |
Mägi, R., Horikoshi, M., Sofer, T., Mahajan, A., Kitajima, H., Franceschini, N., ... & Morris, A. P. (2017). Trans-ethnic meta-regression of genome-wide association studies accounting for ancestry increases power for discovery and improves fine-mapping resolution. Human molecular genetics, 26(18), 3639-3650. |
| ## Column mapping |
|
| Raw header |
Canonical |
chisq_association |
CHISQ |
Chromosome |
CHR |
EA |
EA |
EAF |
EAF |
Effects |
DIRECTION |
MarkerName |
SNPID |
ndf_association |
ndf_association |
NEA |
NEA |
Nsample |
N |
P-value_association |
P |
Position |
POS |
| ## Coverage |
|
6/9 tier groups satisfied.
| Tier |
Status |
Matched |
Missing |
| Variant ID |
yes |
SNPID |
rsID |
| Genomic location |
yes |
CHR, POS |
— |
| Effect / other allele |
yes |
EA, NEA |
— |
| Effect size |
no |
— |
BETA, OR, HR, Z |
| Uncertainty |
no |
— |
SE |
| P-value |
yes |
P |
MLOG10P |
| Sample size |
yes |
N |
N_CASE |
| Allele frequency |
yes |
EAF |
MAF, NEAF |
| Imputation / QC |
no |
— |
INFO |
| ## See also |
|
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