fastgwa
Overview
| Field |
Value |
| Format key |
fastgwa |
| Spec file |
formats/fastgwa.json |
| Cite name |
fastGWA |
| Version |
20220726 |
| Source |
https://yanglab.westlake.edu.cn/software/gcta/#fastGWA |
| Source (2) |
https://yanglab.westlake.edu.cn/software/gcta/#fastGWA-GLMM |
| Citation |
Jiang, L., Zheng, Z., Qi, T., Kemper, K. E., Wray, N. R., Visscher, P. M., & Yang, J. (2019). A resource-efficient tool for mixed model association analysis of large-scale data. Nature genetics, 51(12), 1749-1755. |
| ## Column mapping |
|
| Raw header |
Canonical |
A1 |
EA |
A2 |
NEA |
AF1 |
EAF |
BETA |
BETA |
CHR |
CHR |
P |
P |
POS |
POS |
SE |
SE |
SNP |
SNPID |
| ## Coverage |
|
7/9 tier groups satisfied.
| Tier |
Status |
Matched |
Missing |
| Variant ID |
yes |
SNPID |
rsID |
| Genomic location |
yes |
CHR, POS |
— |
| Effect / other allele |
yes |
EA, NEA |
— |
| Effect size |
yes |
BETA |
OR, HR, Z |
| Uncertainty |
yes |
SE |
— |
| P-value |
yes |
P |
MLOG10P |
| Sample size |
no |
— |
N, N_CASE |
| Allele frequency |
yes |
EAF |
MAF, NEAF |
| Imputation / QC |
no |
— |
INFO |
| ## See also |
|
|
|