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Contents

  • haploview
  • LDlink
  • LDlinkR

haploview

  • SHORT NAME:haploview
  • FULL NAME:haploview
  • YEAR:2005
  • DESCRIPTION:Haploview is designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses.
  • URL :https://www.broadinstitute.org/haploview/haploview
  • CITATION: Barrett, Jeffrey C., et al. "Haploview: analysis and visualization of LD and haplotype maps." Bioinformatics 21.2 (2005): 263-265.
  • KEY WORDS: LD, haplotype
  • SHORT NAME:LDlink
  • FULL NAME:LDlink
  • YEAR:2015
  • DESCRIPTION:LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.
  • URL :https://ldlink.nci.nih.gov/?tab=home
  • CITATION:Machiela, Mitchell J., and Stephen J. Chanock. "LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants." Bioinformatics 31.21 (2015): 3555-3557.
  • KEY WORDS: linkage disequilibrium

LDlinkR

  • SHORT NAME:LDlinkR
  • FULL NAME:LDlinkR
  • YEAR:2020
  • DESCRIPTION:An R Package for Rapidly Calculating Linkage Disequilibrium Statistics in Diverse Populations
  • URL :https://cran.r-project.org/web/packages/LDlinkR/index.html
  • CITATION:Myers, Timothy A., Stephen J. Chanock, and Mitchell J. Machiela. "LDlinkR: an R package for rapidly calculating linkage disequilibrium statistics in diverse populations." Frontiers in genetics 11 (2020): 157.
  • KEY WORDS: LD, R