DESCRIPTION:Haploview is designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses.
CITATION: Barrett, Jeffrey C., et al. "Haploview: analysis and visualization of LD and haplotype maps." Bioinformatics 21.2 (2005): 263-265.
KEY WORDS: LD, haplotype
LDlink
SHORT NAME:LDlink
FULL NAME:LDlink
YEAR:2015
DESCRIPTION:LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.
URL :https://ldlink.nci.nih.gov/?tab=home
CITATION:Machiela, Mitchell J., and Stephen J. Chanock. "LDlink: a web-based application for exploring population-specific haplotype structure and linking correlated alleles of possible functional variants." Bioinformatics 31.21 (2015): 3555-3557.
KEY WORDS: linkage disequilibrium
LDlinkR
SHORT NAME:LDlinkR
FULL NAME:LDlinkR
YEAR:2020
DESCRIPTION:An R Package for Rapidly Calculating Linkage Disequilibrium Statistics in Diverse Populations
CITATION:Myers, Timothy A., Stephen J. Chanock, and Mitchell J. Machiela. "LDlinkR: an R package for rapidly calculating linkage disequilibrium statistics in diverse populations." Frontiers in genetics 11 (2020): 157.