FULL NAME: HLA-Typing At Protein for Association Studie
YEAR: 2021
DESCRIPTION: HLA-TAPAS (HLA-Typing At Protein for Association Studies) is an HLA-focused pipeline that can handle HLA reference panel construction (MakeReference), HLA imputation (SNP2HLA), and HLA association (HLAassoc).
URL : https://github.com/immunogenomics/HLA-TAPAS
CITATION: Luo, Y., Kanai, M., Choi, W. et al. A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response. Nat Genet 53, 1504–1516 (2021). https://doi.org/10.1038/s41588-021-00935-7
KEY WORDS: HLA
HLARIMNT
SHORT NAME: HLARIMNT
FULL NAME: HLA Reliable IMputatioN by Transformer
YEAR: 2022
URL : https://github.com/seitalab/HLARIMNT
CITATION: Tanaka, K., Kato, K., Nonaka, N., & Seita, J. (2022). Efficient HLA imputation from sequential SNPs data by Transformer. arXiv preprint arXiv:2211.06430.