Skip to content

Contents

  • HLA-TAPAS
  • HKARIMNT

HLA imputation

HLA-TAPAS

  • SHORT NAME: HLA-TAPAS
  • FULL NAME: HLA-Typing At Protein for Association Studie
  • YEAR: 2021
  • DESCRIPTION: HLA-TAPAS (HLA-Typing At Protein for Association Studies) is an HLA-focused pipeline that can handle HLA reference panel construction (MakeReference), HLA imputation (SNP2HLA), and HLA association (HLAassoc).
  • URL : https://github.com/immunogenomics/HLA-TAPAS
  • CITATION: Luo, Y., Kanai, M., Choi, W. et al. A high-resolution HLA reference panel capturing global population diversity enables multi-ancestry fine-mapping in HIV host response. Nat Genet 53, 1504–1516 (2021). https://doi.org/10.1038/s41588-021-00935-7
  • KEY WORDS: HLA

HLARIMNT

  • SHORT NAME: HLARIMNT
  • FULL NAME: HLA Reliable IMputatioN by Transformer
  • YEAR: 2022
  • URL : https://github.com/seitalab/HLARIMNT
  • CITATION: Tanaka, K., Kato, K., Nonaka, N., & Seita, J. (2022). Efficient HLA imputation from sequential SNPs data by Transformer. arXiv preprint arXiv:2211.06430.
  • KEY WORDS: HLA, imputation