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Table of Contents

From Databases

  • GWAS catalog: https://www.ebi.ac.uk/gwas/
  • OpenGWAS: https://gwas.mrcieu.ac.uk/

From Biobanks or Cohorts

Europe and America

  • Finngen 4 (November 30 2020): https://r4.finngen.fi/about
  • Finngen 5 (May 11 2021): https://r5.finngen.fi/about
  • Finngen 6 (January 24 2022): https://r6.finngen.fi/about
  • Finngen 7 (June 1 2022): https://r7.finngen.fi/about
  • Finngen 8 (Dec 1 2022):https://r8.finngen.fi/about
  • Finngen 9 (May 11 2023):https://r9.finngen.fi/about
  • FinnGen-UKBB meta-analysis: https://public-metaresults-fg-ukbb.finngen.fi
  • UKB : https://pheweb.org/UKB-Neale/
  • UKB saige: https://pheweb.org/UKB-SAIGE/
  • UKB fastgwa-glmm: https://yanglab.westlake.edu.cn/resources/ukb_fastgwa/imp_binary/
  • UKB fastgwa: https://yanglab.westlake.edu.cn/resources/ukb_fastgwa/imp/
  • UKB TOPMed: https://pheweb.org/UKB-TOPMed/
  • UKB gene-based: https://genebass.org/
  • UKB exome: https://azphewas.com/
  • Pan-UKB : https://pan.ukbb.broadinstitute.org/
  • MGI 1 : https://pheweb.org/MGI-freeze1/
  • MGI 2 : https://pheweb.org/MGI-freeze2/
  • MGI BioUV: https://pheweb.org/MGI-BioVU/
  • FinMetSeq: https://pheweb.sph.umich.edu/FinMetSeq/
  • Generation Scotland: https://datashare.ed.ac.uk/handle/10283/844
  • CARTaGENE PheWeb: https://cerc-genomic-medicine.ca/pheweb/cartagene/

East Asia

  • Biobank Japan (BBJ) - JENGER: http://jenger.riken.jp/result
  • Biobank Japan (BBJ) - Phewebjp: https://pheweb.jp/
  • China Kadoorie Biobank (CKB): https://pheweb.ckbiobank.org/
  • Tohoku Medical Megabank (TMM) JMorp：https://jmorp.megabank.tohoku.ac.jp/202109/gwas/
  • KoreanChip: https://www.koreanchip.org/downloads
  • KoGES Pheweb: https://koges.leelabsg.org/
  • Taiwan BioBank Pheweb: https://taiwanview.twbiobank.org.tw/pheweb.php

From Global Biobank

  • Global Biobank :http://results.globalbiobankmeta.org/

From Individual Studies

Check the data availability and URLs in the paper.

For example, Program in Complex Trait Genomics, IMB, The University of Queensland.

  • https://cnsgenomics.com/content/data
  • https://ctg.cncr.nl/software/summary_statistics

From Disease Consortiums

These data are often derived from large-scale meta-analyses.

  • DIAGRAM：http://www.diagram-consortium.org/downloads.html
  • Megastroke: https://www.megastroke.org/index.html
  • GIANT (Genetic Investigation of ANthropometric Traits)：https://portals.broadinstitute.org/collaboration/giant/index.php/Main_Page
  • GLGC (Global Lipids Genetics Consortium): http://csg.sph.umich.edu/willer/public/glgc-lipids2021/
  • PGC (Psychiatric Genomics Consortium): https://www.med.unc.edu/pgc/download-results/

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