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Jupyter Notebook

Definition
AI-generated

A Jupyter Notebook is an interactive document mixing code, text, and outputs in cells, executed by a selected kernel (e.g. Python or R); notebooks document exploratory GWAS plots, QC steps, and tutorial-style reanalyses in a linear, shareable format.

Topics
Programming
URL
https://jupyter.org/
Related
Conda JupyterLab Python

Why it matters in GWAS

Many teaching materials and supplementaries ship as .ipynb files, but notebooks are fragile for full repro unless pinned environments (conda, uv, containers) and data paths are documented; converting critical paths to scripts or workflows is common for production GWAS.

Example usage

"Jupyter Notebook is referenced when translating statistical signals into biological context."

Conda JupyterLab Python R uv
Related-term network

Click any node to open that term page.

Node order. The current term is first. Next come every page linked from Related terms, in the same top-to-bottom order as that list. Then new terms appear in two-hop layers: for each of those direct neighbors (in that same order), their related terms are appended if not already listed. A third pass does the same for two-hop nodes. The walk stops when a fixed maximum number of nodes is reached.

References

  • Kluyver T, et al. (2016). Jupyter Notebooks—a publishing format for reproducible computational workflows. Positioning and Power in Academic Publishing.
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