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Conda

Definition
AI-generated

Conda is a cross-language package and environment manager popular in scientific computing; conda environments collect pinned binaries (Python, R, C++ libs) from channels or conda-forge, complementing pip-only stacks when compiled omics dependencies are required.

Topics
Programming
URL
https://docs.conda.io/
Related
Docker Jupyter Notebook JupyterLab

Why it matters in GWAS

GWAS tutorials, Scanpy/gwaslab workflows, and HPC modules often assume a environment.yml; papers that omit channel lists and exact builds complicate replication compared to sharing a lockfile or container atop the same conda solve.

Example usage

"We exported a conda environment YAML from the analysis VM and verified conda env create reproduced the GWAS figures."

Docker Jupyter Notebook JupyterLab Python R SCANPY uv
Related-term network

Click any node to open that term page.

Node order. The current term is first. Next come every page linked from Related terms, in the same top-to-bottom order as that list. Then new terms appear in two-hop layers: for each of those direct neighbors (in that same order), their related terms are appended if not already listed. A third pass does the same for two-hop nodes. The walk stops when a fixed maximum number of nodes is reached.

References

  • Anaconda Inc. conda documentation. https://docs.conda.io/
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