Update Log¶

202609¶

v0.3.1

• PyPI wheels include the genoabo package again (0.3.0 wheels shipped the CLI entry point only)

v0.3.0

• Unphased homozygous O_DEL is O/O regardless of rs8176746; three-marker missing markers are MISSING_MARKER; 6746/6747 clash is CONFLICT
• GP/DS take precedence over leftover phased GT; VCF INFO score reaches inspect/QC
• Docs match real auto-build, --strict-method, TSV NA vs HTML unknown
• Tests lock auto-selection, CLI --inspect / --out, extended, confidence, and example expected_calls.txt

v0.2.0

• Documentation site Update Log
• Documentation site Usage page (CLI flags, outputs, Python API)
• Package and citation version 0.2.0 (same inference methods as v0.1.0)

v0.1.0 initial public release.

• Inference methods: common, three-marker, ukb, and extended
• Input formats: VCF/BCF, PGEN, PLINK1, and BGEN
• Genome builds: GRCh37/hg19, GRCh38/hg38, and T2T-CHM13v2
• Documentation site (Zensical), synthetic and 1000 Genomes examples, and HTML run reports