LDSC in gwaslab¶

In [1]:

import gwaslab as gl

import gwaslab as gl

Loading and filter in only Hapmap3 SNPs¶

In [2]:

t2d = gl.Sumstats("t2d_bbj.txt.gz",
             snpid="SNP",
             chrom="CHR",
             pos="POS",
             ea="ALT",
             nea="REF",
             beta="BETA",
             se="SE",
             p="P",
             direction="Dir",
             build="19",             
             n="N", verbose=False)

t2d = gl.Sumstats("t2d_bbj.txt.gz", snpid="SNP", chrom="CHR", pos="POS", ea="ALT", nea="REF", beta="BETA", se="SE", p="P", direction="Dir", build="19", n="N", verbose=False)

In [3]:

t2d.filter_hapmap3(inplace=True)

t2d.filter_hapmap3(inplace=True)

2024/02/13 16:47:48 Start to extract HapMap3 SNPs...v3.4.40
2024/02/13 16:47:48  -Current Dataframe shape : 12557761 x 11 ; Memory usage: 909.26 MB
2024/02/13 16:47:48  -Loading Hapmap3 variants from built-in datasets...
2024/02/13 16:47:49  -Since rsID not in sumstats, CHR:POS( build 19) will be used for matching...
2024/02/13 16:48:03  -Checking if alleles are same...
2024/02/13 16:48:04  -Variants with macthed alleles: 1092430
2024/02/13 16:48:04  -Raw input contains 1092430 Hapmap3 variants based on CHR:POS...
2024/02/13 16:48:04 Finished extracting HapMap3 SNPs.

Heritability estimation¶

In [4]:

# available since v3.4.39
t2d.estimate_h2_by_ldsc(ref_ld_chr = "/home/yunye/tools/ldsc/eas_ldscores/", 
                               w_ld_chr = "/home/yunye/tools/ldsc/eas_ldscores/")

# available since v3.4.39 t2d.estimate_h2_by_ldsc(ref_ld_chr = "/home/yunye/tools/ldsc/eas_ldscores/", w_ld_chr = "/home/yunye/tools/ldsc/eas_ldscores/")

2024/02/13 16:48:04 Start to extract HapMap3 SNPs...v3.4.40
2024/02/13 16:48:04  -Current Dataframe shape : 1092430 x 12 ; Memory usage: 116.80 MB
2024/02/13 16:48:04  -Loading Hapmap3 variants from built-in datasets...
2024/02/13 16:48:06 Start to run LD score regression...v3.4.40
2024/02/13 16:48:06  -Current Dataframe shape : 1092430 x 12 ; Memory usage: 116.80 MB
2024/02/13 16:48:06  -Run single variate LD score regression:
2024/02/13 16:48:06   -Adopted from LDSC source code: https://github.com/bulik/ldsc
2024/02/13 16:48:06   -Please cite LDSC: Bulik-Sullivan, et al. LD Score Regression Distinguishes Confounding from Polygenicity in Genome-Wide Association Studies. Nature Genetics, 2015.
2024/02/13 16:48:06  -Arguments:
2024/02/13 16:48:06   -ref_ld_chr:/home/yunye/tools/ldsc/eas_ldscores/
2024/02/13 16:48:06   -w_ld_chr:/home/yunye/tools/ldsc/eas_ldscores/
2024/02/13 16:48:06  -LDSC log:
2024/02/13 16:48:06   -Reading reference panel LD Score from /home/yunye/tools/ldsc/eas_ldscores/[1-22] ... (ldscore_fromlist)
2024/02/13 16:48:07   -Read reference panel LD Scores for 1208050 SNPs.
2024/02/13 16:48:07   -Removing partitioned LD Scores with zero variance.
2024/02/13 16:48:07   -Reading regression weight LD Score from /home/yunye/tools/ldsc/eas_ldscores/[1-22] ... (ldscore_fromlist)
2024/02/13 16:48:08   -Read regression weight LD Scores for 1208050 SNPs.
2024/02/13 16:48:09   -After merging with reference panel LD, 1079390 SNPs remain.
2024/02/13 16:48:10   -After merging with regression SNP LD, 1079390 SNPs remain.
2024/02/13 16:48:10   -Using two-step estimator with cutoff at 30.
2024/02/13 16:48:10  -Results have been stored in .ldsc_h2
2024/02/13 16:48:10 Finished running LD score regression.

In [5]:

t2d.ldsc_h2

t2d.ldsc_h2

Out[5]:

	h2_obs	h2_se	Lambda_gc	Mean_chi2	Intercept	Intercept_se	Ratio	Ratio_se
0	0.10394433	0.00650644	1.32982693	1.49125406	1.09147712	0.01056279	0.18621142	0.02150169

Genetic correlation¶

In [6]:

bmi_female = gl.Sumstats("bbj_bmi_female.txt.gz",fmt="auto",ea="REF",nea="ALT",rsid="SNP",n=70000, sep="\t",build="19",verbose=False)
bmi_male = gl.Sumstats("bbj_bmi_male.txt.gz",fmt="auto",ea="REF",nea="ALT",rsid="SNP",n=80000,sep="\t",build="19",verbose=False)

bmi_female = gl.Sumstats("bbj_bmi_female.txt.gz",fmt="auto",ea="REF",nea="ALT",rsid="SNP",n=70000, sep="\t",build="19",verbose=False) bmi_male = gl.Sumstats("bbj_bmi_male.txt.gz",fmt="auto",ea="REF",nea="ALT",rsid="SNP",n=80000,sep="\t",build="19",verbose=False)

• other_traits : a list of gl.Sumstats object
• rg : alias for each trait including the main trait

In [7]:

# available since v3.4.39
t2d.estimate_rg_by_ldsc(other_traits=[bmi_female,bmi_male], 
                               rg="T2D,BMI_female,BMI_male",
                               ref_ld_chr = "/home/yunye/tools/ldsc/eas_ldscores/", 
                               w_ld_chr = "/home/yunye/tools/ldsc/eas_ldscores/")

# available since v3.4.39 t2d.estimate_rg_by_ldsc(other_traits=[bmi_female,bmi_male], rg="T2D,BMI_female,BMI_male", ref_ld_chr = "/home/yunye/tools/ldsc/eas_ldscores/", w_ld_chr = "/home/yunye/tools/ldsc/eas_ldscores/")

2024/02/13 16:48:27 Start to extract HapMap3 SNPs...v3.4.40
2024/02/13 16:48:27  -Current Dataframe shape : 1092430 x 12 ; Memory usage: 116.80 MB
2024/02/13 16:48:27  -Loading Hapmap3 variants from built-in datasets...
2024/02/13 16:48:29 Start to run LD score regression for genetic correlation...v3.4.40
2024/02/13 16:48:29  -Current Dataframe shape : 1092430 x 12 ; Memory usage: 116.80 MB
2024/02/13 16:48:29  -Run cross-trait LD score regression:
2024/02/13 16:48:29   -Adopted from LDSC source code: https://github.com/bulik/ldsc
2024/02/13 16:48:29   -Please cite LDSC: Bulik-Sullivan, B., et al. An Atlas of Genetic Correlations across Human Diseases and Traits. Nature Genetics, 2015.
2024/02/13 16:48:29  -Arguments:
2024/02/13 16:48:29   -rg:T2D,BMI_female,BMI_male
2024/02/13 16:48:29   -ref_ld_chr:/home/yunye/tools/ldsc/eas_ldscores/
2024/02/13 16:48:29   -w_ld_chr:/home/yunye/tools/ldsc/eas_ldscores/
2024/02/13 16:48:29  -Processing sumstats with alias BMI_female (Study_1)
2024/02/13 16:48:29  -Processing sumstats with alias BMI_male (Study_1)
2024/02/13 16:48:29  -LDSC log:
2024/02/13 16:48:29   -Reading reference panel LD Score from /home/yunye/tools/ldsc/eas_ldscores/[1-22] ... (ldscore_fromlist)
2024/02/13 16:48:31   -Read reference panel LD Scores for 1208050 SNPs.
2024/02/13 16:48:31   -Removing partitioned LD Scores with zero variance.
2024/02/13 16:48:31   -Reading regression weight LD Score from /home/yunye/tools/ldsc/eas_ldscores/[1-22] ... (ldscore_fromlist)
2024/02/13 16:48:32   -Read regression weight LD Scores for 1208050 SNPs.
2024/02/13 16:48:32   -After merging with reference panel LD, 1079390 SNPs remain.
2024/02/13 16:48:33   -After merging with regression SNP LD, 1079390 SNPs remain.
2024/02/13 16:48:33   -Computing rg for phenotype 2/3
2024/02/13 16:48:33   -Read summary statistics for 5961600 SNPs.
2024/02/13 16:48:38   -After merging with summary statistics, 1021957 SNPs remain.
2024/02/13 16:48:39   -1021957 SNPs with valid alleles.
2024/02/13 16:48:40   -Heritability of phenotype 1
2024/02/13 16:48:40   -Total Observed scale h2: 0.09687973 (0.00885768)
                       -Lambda GC: 1.34889231
                       -Mean Chi^2: 1.50928684
                       -Intercept: 1.12024032 (0.02516315)
                       -Ratio: 0.23609547 (0.04940861)
2024/02/13 16:48:40   -Heritability of phenotype 2/3
2024/02/13 16:48:40   -Total Observed scale h2: 0.19319917 (0.01213263)
                       -Lambda GC: 1.2537503
                       -Mean Chi^2: 1.31732059
                       -Intercept: 1.0306093 (0.01022627)
                       -Ratio: 0.09646175 (0.03222695)
2024/02/13 16:48:40   -Genetic Covariance
2024/02/13 16:48:40   -Total Observed scale gencov: 0.04387074 (0.00729069)
                       -Mean z1*z2: 0.12628027
                       -Intercept: 0.01918354 (0.00945413)
2024/02/13 16:48:40   -Genetic Correlation
2024/02/13 16:48:40   -Genetic Correlation: 0.32066816 (0.06227918)
                       -Z-score: 5.14888223
                       -P: 2.62043342e-07

2024/02/13 16:48:40   -Computing rg for phenotype 3/3
2024/02/13 16:48:40   -Read summary statistics for 5961600 SNPs.
2024/02/13 16:48:45   -After merging with summary statistics, 1021957 SNPs remain.
2024/02/13 16:48:46   -1021957 SNPs with valid alleles.
2024/02/13 16:48:47   -Heritability of phenotype 3/3
2024/02/13 16:48:47   -Total Observed scale h2: 0.17595184 (0.01138382)
                       -Lambda GC: 1.25741577
                       -Mean Chi^2: 1.34453038
                       -Intercept: 1.04768706 (0.01071735)
                       -Ratio: 0.13841176 (0.03110712)
2024/02/13 16:48:47   -Genetic Covariance
2024/02/13 16:48:47   -Total Observed scale gencov: 0.02739806 (0.00705736)
                       -Mean z1*z2: 0.07617508
                       -Intercept: 0.00535343 (0.0118926)
2024/02/13 16:48:47   -Genetic Correlation
2024/02/13 16:48:47   -Genetic Correlation: 0.20984874 (0.06008801)
                       -Z-score: 3.49235659
                       -P: 0.00047878

2024/02/13 16:48:47 Summary of Genetic Correlation Results
 p1         p2       rg       se        z            p   h2_obs  h2_obs_se   h2_int  h2_int_se  gcov_int  gcov_int_se
T2D BMI_female 0.320668 0.062279 5.148882 2.620433e-07 0.193199   0.012133 1.030609   0.010226  0.019184     0.009454
T2D   BMI_male 0.209849 0.060088 3.492357 4.787786e-04 0.175952   0.011384 1.047687   0.010717  0.005353     0.011893

2024/02/13 16:48:47  -Results have been stored in .ldsc_rg
2024/02/13 16:48:47 Finished running LD score regression for genetic correlation.

In [8]:

t2d.ldsc_rg

t2d.ldsc_rg

Out[8]:

	p1	p2	rg	se	z	p	h2_obs	h2_obs_se	h2_int	h2_int_se	gcov_int	gcov_int_se
0	T2D	BMI_female	0.320668	0.062279	5.148882	2.620433e-07	0.193199	0.012133	1.030609	0.010226	0.019184	0.009454
1	T2D	BMI_male	0.209849	0.060088	3.492357	4.787786e-04	0.175952	0.011384	1.047687	0.010717	0.005353	0.011893

In [9]:

fig,ax,log,df = gl.plot_rg(t2d.ldsc_rg)

fig,ax,log,df = gl.plot_rg(t2d.ldsc_rg)

2024/02/13 16:48:47 Start to create ldsc genetic correlation heatmap...
2024/02/13 16:48:47 Raw dataset records: 2
2024/02/13 16:48:47  -Raw dataset non-NA records: 2
2024/02/13 16:48:47 Filling diagnal line and duplicated pair for plotting...
2024/02/13 16:48:47 Valid unique trait pairs: 2
2024/02/13 16:48:47  -Valid unique trait1: 1
2024/02/13 16:48:47  -Valid unique trait2: 2
2024/02/13 16:48:47  -Significant correlations with P < 0.05: 2
2024/02/13 16:48:47  -Significant correlations after Bonferroni correction: 2
2024/02/13 16:48:47  -Significant correlations with FDR <0.05: 2
2024/02/13 16:48:47 Plotting heatmap...
2024/02/13 16:48:47 Full cell : fdr-corrected P == 0.05
2024/02/13 16:48:47 P value annotation text (Order: Bon -> FDR -> Pnom): 
2024/02/13 16:48:47  -* : non-corrected P < 0.05 
2024/02/13 16:48:47  -** : fdr-corrected P < 0.05 
2024/02/13 16:48:47  -*** : bon-corrected P < 0.05 
2024/02/13 16:48:47 Start to save figure...
2024/02/13 16:48:47  -Skip saving figure!
2024/02/13 16:48:47 Finished saving figure...
2024/02/13 16:48:47 Finished creating ldsc genetic correlation heatmap!

Partitioned h2¶

In [10]:

# available since v3.4.40
t2d.estimate_partitioned_h2_by_ldsc(       ref_ld_chr = "/home/yunye/tools/ldsc/eas_baseline/baselineLD2_2/baselineLD.", 
                               w_ld_chr = "/home/yunye/tools/ldsc/eas_weights/weights.EAS.hm3_noMHC.",
                               frqfile_chr= "/home/yunye/tools/ldsc/eas_frq/1000G.EAS.QC.",
                               overlap_annot = True, 
                               print_coefficients = True, 
                               print_delete_vals=True)

# available since v3.4.40 t2d.estimate_partitioned_h2_by_ldsc( ref_ld_chr = "/home/yunye/tools/ldsc/eas_baseline/baselineLD2_2/baselineLD.", w_ld_chr = "/home/yunye/tools/ldsc/eas_weights/weights.EAS.hm3_noMHC.", frqfile_chr= "/home/yunye/tools/ldsc/eas_frq/1000G.EAS.QC.", overlap_annot = True, print_coefficients = True, print_delete_vals=True)

2024/02/13 16:48:47 Start to extract HapMap3 SNPs...v3.4.40
2024/02/13 16:48:47  -Current Dataframe shape : 1092430 x 12 ; Memory usage: 116.80 MB
2024/02/13 16:48:47  -Loading Hapmap3 variants from built-in datasets...
2024/02/13 16:48:49 Start to run LD score regression...v3.4.40
2024/02/13 16:48:49  -Current Dataframe shape : 1092430 x 12 ; Memory usage: 116.80 MB
2024/02/13 16:48:49  -Run partitioned LD score regression:
2024/02/13 16:48:49   -Adopted from LDSC source code: https://github.com/bulik/ldsc
2024/02/13 16:48:49   -Please cite LDSC: Bulik-Sullivan, et al. LD Score Regression Distinguishes Confounding from Polygenicity in Genome-Wide Association Studies. Nature Genetics, 2015.
2024/02/13 16:48:49  -Arguments:
2024/02/13 16:48:49   -ref_ld_chr:/home/yunye/tools/ldsc/eas_baseline/baselineLD2_2/baselineLD.
2024/02/13 16:48:49   -w_ld_chr:/home/yunye/tools/ldsc/eas_weights/weights.EAS.hm3_noMHC.
2024/02/13 16:48:49   -frqfile_chr:/home/yunye/tools/ldsc/eas_frq/1000G.EAS.QC.
2024/02/13 16:48:49   -overlap_annot:True
2024/02/13 16:48:49   -print_coefficients:True
2024/02/13 16:48:49   -print_delete_vals:True
2024/02/13 16:48:49  -LDSC log:
2024/02/13 16:48:49   -Reading reference panel LD Score from /home/yunye/tools/ldsc/eas_baseline/baselineLD2_2/baselineLD.[1-22] ... (ldscore_fromlist)
2024/02/13 16:49:01   -Read reference panel LD Scores for 1071448 SNPs.
2024/02/13 16:49:02   -Removing partitioned LD Scores with zero variance.
2024/02/13 16:49:02   -Reading regression weight LD Score from /home/yunye/tools/ldsc/eas_weights/weights.EAS.hm3_noMHC.[1-22] ... (ldscore_fromlist)
2024/02/13 16:49:03   -Read regression weight LD Scores for 1071448 SNPs.
2024/02/13 16:49:05   -After merging with reference panel LD, 1061153 SNPs remain.
2024/02/13 16:49:06   -After merging with regression SNP LD, 1061153 SNPs remain.
2024/02/13 16:49:07   -Removed 49 SNPs with chi^2 > 191.764 (1061104 SNPs remain)
2024/02/13 16:49:10   -Printing block jackknife delete values to ldsc.delete.
2024/02/13 16:49:10   -Printing partitioned block jackknife delete values to ldsc.part_delete.
2024/02/13 16:49:10   -Reading annot matrix from /home/yunye/tools/ldsc/eas_baseline/baselineLD2_2/baselineLD.[1-22] ... (annot)
2024/02/13 16:50:05  -Results have been stored in .ldsc_h2
2024/02/13 16:50:05 Finished running LD score regression.

In [11]:

t2d.ldsc_partitioned_h2_summary

t2d.ldsc_partitioned_h2_summary

Out[11]:

	h2_obs	h2_se	Lambda_gc	Mean_chi2	Intercept	Intercept_se	Ratio	Ratio_se
0	0.11773265	0.00727336	1.33210306	1.47668034	1.07649298	0.01228635	0.16047018	0.02577482

In [12]:

t2d.ldsc_partitioned_h2_results

t2d.ldsc_partitioned_h2_results

Out[12]:

	Category	Prop._SNPs	Prop._h2	Prop._h2_std_error	Enrichment	Enrichment_std_error	Enrichment_p	Coefficient	Coefficient_std_error	Coefficient_z-score
0	baseL2_0	1.000000	1.000000	0.000000	1.000000	0.000000	NA	-1.927388e-08	1.156327e-08	-1.666820
1	Coding_UCSC.bedL2_0	0.014196	0.068254	0.034691	4.808050	2.443726	0.118872	-2.544919e-08	9.348275e-08	-0.272234
2	Coding_UCSC.bed.flanking.500L2_0	0.049260	0.072198	0.047989	1.465653	0.974189	0.631156	-9.865231e-09	2.466959e-08	-0.399894
3	Conserved_LindbladToh.bedL2_0	0.024551	0.088877	0.057129	3.620093	2.326953	0.250205	2.010761e-08	9.386840e-08	0.214211
4	Conserved_LindbladToh.bed.flanking.500L2_0	0.305295	0.649833	0.100456	2.128542	0.329046	0.001299	-5.694877e-09	1.189500e-08	-0.478762
...	...	...	...	...	...	...	...	...	...	...
92	Ancient_Sequence_Age_Human_EnhancerL2_0	0.005145	0.078218	0.024054	15.202940	4.675287	0.002975	3.149492e-07	1.103395e-07	2.854366
93	Ancient_Sequence_Age_Human_Enhancer.flanking.5...	0.009070	0.011566	0.026086	1.275182	2.876194	0.923485	5.790740e-09	6.996917e-08	0.082761
94	Human_Enhancer_Villar_Species_Enhancer_CountL2_0	0.066854	0.212233	0.072376	3.174600	1.082602	0.04309	4.797773e-09	5.983189e-09	0.801875
95	Human_Promoter_Villar_ExACL2_0	0.002439	0.056685	0.041189	23.242748	16.889064	0.187759	2.645270e-07	3.249973e-07	0.813936
96	Human_Promoter_Villar_ExAC.flanking.500L2_0	0.000567	-0.009555	0.017212	-16.857889	30.365859	0.556254	-1.734589e-08	6.804492e-07	-0.025492

97 rows × 10 columns

Cell type specific¶

In [13]:

# available since v3.4.40
t2d.estimate_h2_cts_by_ldsc(ref_ld_chr = "/home/yunye/tools/ldsc/eas_baseline/baseline1_2/baseline.", 
                            ref_ld_chr_cts = "/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Multi_tissue_gene_expr.EAS.ldcts.new",
                            w_ld_chr = "/home/yunye/tools/ldsc/eas_weights/weights.EAS.hm3_noMHC.")

# available since v3.4.40 t2d.estimate_h2_cts_by_ldsc(ref_ld_chr = "/home/yunye/tools/ldsc/eas_baseline/baseline1_2/baseline.", ref_ld_chr_cts = "/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Multi_tissue_gene_expr.EAS.ldcts.new", w_ld_chr = "/home/yunye/tools/ldsc/eas_weights/weights.EAS.hm3_noMHC.")

2024/02/13 16:50:05 Start to extract HapMap3 SNPs...v3.4.40
2024/02/13 16:50:05  -Current Dataframe shape : 1092430 x 12 ; Memory usage: 116.80 MB
2024/02/13 16:50:05  -Loading Hapmap3 variants from built-in datasets...
2024/02/13 16:50:07 Start to run LD score regression...v3.4.40
2024/02/13 16:50:07  -Current Dataframe shape : 1092430 x 12 ; Memory usage: 116.80 MB
2024/02/13 16:50:07  -Run cell type specific LD score regression:
2024/02/13 16:50:07   -Adopted from LDSC source code: https://github.com/bulik/ldsc
2024/02/13 16:50:07   -Please cite LDSC: Finucane, H. K., Reshef, Y. A., Anttila, V., Slowikowski, K., Gusev, A., Byrnes, A., ... & Price, A. L. (2018). Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types. Nature genetics, 50(4), 621-629.
2024/02/13 16:50:07  -Arguments:
2024/02/13 16:50:07   -ref_ld_chr:/home/yunye/tools/ldsc/eas_baseline/baseline1_2/baseline.
2024/02/13 16:50:07   -ref_ld_chr_cts:/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Multi_tissue_gene_expr.EAS.ldcts.new
2024/02/13 16:50:07   -w_ld_chr:/home/yunye/tools/ldsc/eas_weights/weights.EAS.hm3_noMHC.
2024/02/13 16:50:07  -LDSC log:
2024/02/13 16:50:07   -Reading reference panel LD Score from /home/yunye/tools/ldsc/eas_baseline/baseline1_2/baseline.[1-22] ... (ldscore_fromlist)
2024/02/13 16:50:14   -Read reference panel LD Scores for 1071448 SNPs.
2024/02/13 16:50:14   -Removing partitioned LD Scores with zero variance.
2024/02/13 16:50:15   -Reading regression weight LD Score from /home/yunye/tools/ldsc/eas_weights/weights.EAS.hm3_noMHC.[1-22] ... (ldscore_fromlist)
2024/02/13 16:50:16   -Read regression weight LD Scores for 1071448 SNPs.
2024/02/13 16:50:16   -After merging with reference panel LD, 1061153 SNPs remain.
2024/02/13 16:50:17   -After merging with regression SNP LD, 1061153 SNPs remain.
2024/02/13 16:50:18   -Removed 49 SNPs with chi^2 > 191.764 (1061104 SNPs remain)
2024/02/13 16:50:18   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.1.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:50:20   -Performing regression.
2024/02/13 16:50:22   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.2.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:50:24   -Performing regression.
2024/02/13 16:50:26   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.3.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:50:29   -Performing regression.
2024/02/13 16:50:32   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.4.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:50:35   -Performing regression.
2024/02/13 16:50:38   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.5.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:50:40   -Performing regression.
2024/02/13 16:50:43   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.6.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:50:45   -Performing regression.
2024/02/13 16:50:48   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.7.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:50:50   -Performing regression.
2024/02/13 16:50:53   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.8.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:50:55   -Performing regression.
2024/02/13 16:50:57   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.9.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:51:00   -Performing regression.
2024/02/13 16:51:04   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.10.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:51:06   -Performing regression.
2024/02/13 16:51:09   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.11.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:51:11   -Performing regression.
2024/02/13 16:51:14   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.12.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:51:16   -Performing regression.
2024/02/13 16:51:19   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.13.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:51:22   -Performing regression.
2024/02/13 16:51:23   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.14.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:51:26   -Performing regression.
2024/02/13 16:51:28   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.15.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:51:31   -Performing regression.
2024/02/13 16:51:34   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.16.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:51:36   -Performing regression.
2024/02/13 16:51:38   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.17.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:51:41   -Performing regression.
2024/02/13 16:51:43   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.18.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:51:46   -Performing regression.
2024/02/13 16:51:48   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.19.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:51:51   -Performing regression.
2024/02/13 16:51:53   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.20.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:51:55   -Performing regression.
2024/02/13 16:51:58   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.21.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)

2024/02/13 16:52:00   -Performing regression.
2024/02/13 16:52:04   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.22.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:52:07   -Performing regression.
2024/02/13 16:52:09   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.23.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:52:12   -Performing regression.
2024/02/13 16:52:13   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.24.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:52:16   -Performing regression.
2024/02/13 16:52:19   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.25.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:52:21   -Performing regression.
2024/02/13 16:52:24   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.26.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:52:26   -Performing regression.
2024/02/13 16:52:28   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.27.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:52:31   -Performing regression.
2024/02/13 16:52:33   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.28.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:52:35   -Performing regression.
2024/02/13 16:52:39   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.29.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:52:42   -Performing regression.
2024/02/13 16:52:44   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.30.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:52:46   -Performing regression.
2024/02/13 16:52:48   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.31.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:52:51   -Performing regression.
2024/02/13 16:52:54   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.32.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:52:56   -Performing regression.
2024/02/13 16:52:58   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.33.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:01   -Performing regression.
2024/02/13 16:53:03   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.34.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:05   -Performing regression.
2024/02/13 16:53:08   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.35.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:11   -Performing regression.
2024/02/13 16:53:13   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.36.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:15   -Performing regression.
2024/02/13 16:53:18   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.37.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:20   -Performing regression.
2024/02/13 16:53:23   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.38.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:25   -Performing regression.
2024/02/13 16:53:27   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.39.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:29   -Performing regression.
2024/02/13 16:53:32   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.40.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:34   -Performing regression.
2024/02/13 16:53:36   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.41.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:39   -Performing regression.
2024/02/13 16:53:42   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.42.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:44   -Performing regression.
2024/02/13 16:53:46   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.43.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:49   -Performing regression.
2024/02/13 16:53:51   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.44.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:54   -Performing regression.
2024/02/13 16:53:56   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.45.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:53:58   -Performing regression.
2024/02/13 16:54:00   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.46.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:54:02   -Performing regression.
2024/02/13 16:54:04   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.47.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:54:06   -Performing regression.
2024/02/13 16:54:08   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.48.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)

2024/02/13 16:54:11   -Performing regression.
2024/02/13 16:54:13   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.49.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:54:16   -Performing regression.
2024/02/13 16:54:18   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.50.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:54:21   -Performing regression.
2024/02/13 16:54:23   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.51.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:54:25   -Performing regression.
2024/02/13 16:54:28   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.52.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:54:30   -Performing regression.
2024/02/13 16:54:33   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.53.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/GTEx.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:54:36   -Performing regression.
2024/02/13 16:54:39   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.1.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:54:43   -Performing regression.
2024/02/13 16:54:47   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.2.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:54:49   -Performing regression.
2024/02/13 16:54:51   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.3.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:54:54   -Performing regression.
2024/02/13 16:54:57   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.4.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:54:59   -Performing regression.
2024/02/13 16:55:01   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.5.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:03   -Performing regression.
2024/02/13 16:55:05   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.6.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:08   -Performing regression.
2024/02/13 16:55:10   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.7.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:13   -Performing regression.
2024/02/13 16:55:15   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.8.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:17   -Performing regression.
2024/02/13 16:55:19   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.9.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:22   -Performing regression.
2024/02/13 16:55:24   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.10.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:27   -Performing regression.
2024/02/13 16:55:28   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.11.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:31   -Performing regression.
2024/02/13 16:55:32   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.12.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:35   -Performing regression.
2024/02/13 16:55:38   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.13.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:40   -Performing regression.
2024/02/13 16:55:42   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.14.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:44   -Performing regression.
2024/02/13 16:55:47   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.15.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:49   -Performing regression.
2024/02/13 16:55:51   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.16.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:54   -Performing regression.
2024/02/13 16:55:57   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.17.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:55:59   -Performing regression.
2024/02/13 16:56:01   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.18.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:56:03   -Performing regression.
2024/02/13 16:56:05   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.19.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:56:08   -Performing regression.
2024/02/13 16:56:11   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.20.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:56:13   -Performing regression.
2024/02/13 16:56:16   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.21.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:56:18   -Performing regression.
2024/02/13 16:56:20   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.22.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)

2024/02/13 16:56:23   -Performing regression.
2024/02/13 16:56:25   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.23.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:56:27   -Performing regression.
2024/02/13 16:56:29   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.24.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:56:32   -Performing regression.
2024/02/13 16:56:34   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.25.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:56:36   -Performing regression.
2024/02/13 16:56:39   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.26.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:56:41   -Performing regression.
2024/02/13 16:56:44   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.27.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:56:47   -Performing regression.
2024/02/13 16:56:49   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.28.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:56:51   -Performing regression.
2024/02/13 16:56:53   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.29.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:56:56   -Performing regression.
2024/02/13 16:56:58   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.30.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:01   -Performing regression.
2024/02/13 16:57:03   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.31.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:05   -Performing regression.
2024/02/13 16:57:07   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.32.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:09   -Performing regression.
2024/02/13 16:57:11   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.33.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:14   -Performing regression.
2024/02/13 16:57:16   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.34.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:18   -Performing regression.
2024/02/13 16:57:20   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.35.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:23   -Performing regression.
2024/02/13 16:57:24   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.36.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:27   -Performing regression.
2024/02/13 16:57:29   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.37.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:32   -Performing regression.
2024/02/13 16:57:34   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.38.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:37   -Performing regression.
2024/02/13 16:57:39   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.39.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:41   -Performing regression.
2024/02/13 16:57:43   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.40.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:46   -Performing regression.
2024/02/13 16:57:48   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.41.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:51   -Performing regression.
2024/02/13 16:57:55   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.42.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:57:59   -Performing regression.
2024/02/13 16:58:01   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.43.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:58:04   -Performing regression.
2024/02/13 16:58:07   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.44.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:58:09   -Performing regression.
2024/02/13 16:58:11   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.45.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:58:13   -Performing regression.
2024/02/13 16:58:15   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.46.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:58:18   -Performing regression.
2024/02/13 16:58:20   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.47.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:58:23   -Performing regression.
2024/02/13 16:58:25   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.48.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:58:27   -Performing regression.
2024/02/13 16:58:30   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.49.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)

2024/02/13 16:58:32   -Performing regression.
2024/02/13 16:58:34   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.50.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:58:36   -Performing regression.
2024/02/13 16:58:39   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.51.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:58:41   -Performing regression.
2024/02/13 16:58:43   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.52.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:58:46   -Performing regression.
2024/02/13 16:58:48   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.53.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:58:51   -Performing regression.
2024/02/13 16:58:53   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.54.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:58:56   -Performing regression.
2024/02/13 16:59:00   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.55.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:59:04   -Performing regression.
2024/02/13 16:59:06   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.56.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:59:08   -Performing regression.
2024/02/13 16:59:11   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.57.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:59:13   -Performing regression.
2024/02/13 16:59:15   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.58.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:59:17   -Performing regression.
2024/02/13 16:59:20   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.59.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:59:22   -Performing regression.
2024/02/13 16:59:25   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.60.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:59:28   -Performing regression.
2024/02/13 16:59:30   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.61.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:59:33   -Performing regression.
2024/02/13 16:59:35   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.62.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:59:37   -Performing regression.
2024/02/13 16:59:39   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.63.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:59:41   -Performing regression.
2024/02/13 16:59:43   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.64.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:59:45   -Performing regression.
2024/02/13 16:59:48   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.65.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:59:50   -Performing regression.
2024/02/13 16:59:53   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.66.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 16:59:56   -Performing regression.
2024/02/13 16:59:58   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.67.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:00   -Performing regression.
2024/02/13 17:00:02   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.68.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:04   -Performing regression.
2024/02/13 17:00:06   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.69.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:08   -Performing regression.
2024/02/13 17:00:10   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.70.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:13   -Performing regression.
2024/02/13 17:00:15   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.71.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:17   -Performing regression.
2024/02/13 17:00:19   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.72.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:22   -Performing regression.
2024/02/13 17:00:24   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.73.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:27   -Performing regression.
2024/02/13 17:00:29   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.74.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:31   -Performing regression.
2024/02/13 17:00:33   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.75.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:36   -Performing regression.
2024/02/13 17:00:37   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.76.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)

2024/02/13 17:00:40   -Performing regression.
2024/02/13 17:00:42   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.77.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:44   -Performing regression.
2024/02/13 17:00:46   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.78.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:49   -Performing regression.
2024/02/13 17:00:51   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.79.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:53   -Performing regression.
2024/02/13 17:00:56   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.80.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:00:59   -Performing regression.
2024/02/13 17:01:01   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.81.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:04   -Performing regression.
2024/02/13 17:01:06   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.82.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:08   -Performing regression.
2024/02/13 17:01:10   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.83.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:13   -Performing regression.
2024/02/13 17:01:15   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.84.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:18   -Performing regression.
2024/02/13 17:01:20   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.85.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:22   -Performing regression.
2024/02/13 17:01:24   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.86.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:27   -Performing regression.
2024/02/13 17:01:29   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.87.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:31   -Performing regression.
2024/02/13 17:01:33   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.88.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:36   -Performing regression.
2024/02/13 17:01:38   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.89.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:40   -Performing regression.
2024/02/13 17:01:42   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.90.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:45   -Performing regression.
2024/02/13 17:01:47   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.91.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:49   -Performing regression.
2024/02/13 17:01:52   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.92.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:55   -Performing regression.
2024/02/13 17:01:57   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.93.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:01:59   -Performing regression.
2024/02/13 17:02:01   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.94.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:02:04   -Performing regression.
2024/02/13 17:02:05   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.95.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:02:08   -Performing regression.
2024/02/13 17:02:10   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.96.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:02:13   -Performing regression.
2024/02/13 17:02:15   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.97.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:02:18   -Performing regression.
2024/02/13 17:02:20   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.98.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:02:23   -Performing regression.
2024/02/13 17:02:25   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.99.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:02:27   -Performing regression.
2024/02/13 17:02:29   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.100.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:02:31   -Performing regression.
2024/02/13 17:02:33   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.101.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:02:36   -Performing regression.
2024/02/13 17:02:38   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.102.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:02:41   -Performing regression.
2024/02/13 17:02:43   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.103.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)

2024/02/13 17:02:46   -Performing regression.
2024/02/13 17:02:48   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.104.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:02:50   -Performing regression.
2024/02/13 17:02:52   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.105.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:02:55   -Performing regression.
2024/02/13 17:02:57   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.106.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:00   -Performing regression.
2024/02/13 17:03:02   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.107.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:05   -Performing regression.
2024/02/13 17:03:07   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.108.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:09   -Performing regression.
2024/02/13 17:03:11   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.109.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:13   -Performing regression.
2024/02/13 17:03:16   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.110.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:18   -Performing regression.
2024/02/13 17:03:21   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.111.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:23   -Performing regression.
2024/02/13 17:03:26   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.112.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:28   -Performing regression.
2024/02/13 17:03:30   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.113.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:33   -Performing regression.
2024/02/13 17:03:34   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.114.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:37   -Performing regression.
2024/02/13 17:03:39   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.115.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:41   -Performing regression.
2024/02/13 17:03:43   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.116.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:46   -Performing regression.
2024/02/13 17:03:48   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.117.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:50   -Performing regression.
2024/02/13 17:03:53   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.118.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:03:55   -Performing regression.
2024/02/13 17:03:58   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.119.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:04:00   -Performing regression.
2024/02/13 17:04:02   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.120.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:04:05   -Performing regression.
2024/02/13 17:04:07   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.121.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:04:09   -Performing regression.
2024/02/13 17:04:11   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.122.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:04:14   -Performing regression.
2024/02/13 17:04:16   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.123.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:04:18   -Performing regression.
2024/02/13 17:04:21   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.124.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:04:23   -Performing regression.
2024/02/13 17:04:26   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.125.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:04:29   -Performing regression.
2024/02/13 17:04:31   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.126.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:04:34   -Performing regression.
2024/02/13 17:04:36   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.127.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:04:38   -Performing regression.
2024/02/13 17:04:40   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.128.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:04:43   -Performing regression.
2024/02/13 17:04:45   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.129.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:04:48   -Performing regression.
2024/02/13 17:04:50   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.130.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)

2024/02/13 17:04:52   -Performing regression.
2024/02/13 17:04:55   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.131.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:04:57   -Performing regression.
2024/02/13 17:04:59   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.132.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:05:02   -Performing regression.
2024/02/13 17:05:04   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.133.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:05:07   -Performing regression.
2024/02/13 17:05:09   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.134.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:05:12   -Performing regression.
2024/02/13 17:05:14   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.135.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:05:17   -Performing regression.
2024/02/13 17:05:19   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.136.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:05:22   -Performing regression.
2024/02/13 17:05:24   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.137.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:05:27   -Performing regression.
2024/02/13 17:05:29   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.138.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:05:32   -Performing regression.
2024/02/13 17:05:36   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.139.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:05:39   -Performing regression.
2024/02/13 17:05:40   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.140.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:05:43   -Performing regression.
2024/02/13 17:05:45   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.141.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:05:47   -Performing regression.
2024/02/13 17:05:50   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.142.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:05:52   -Performing regression.
2024/02/13 17:05:55   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.143.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:05:57   -Performing regression.
2024/02/13 17:06:00   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.144.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:06:02   -Performing regression.
2024/02/13 17:06:05   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.145.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:06:07   -Performing regression.
2024/02/13 17:06:09   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.146.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:06:11   -Performing regression.
2024/02/13 17:06:13   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.147.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:06:16   -Performing regression.
2024/02/13 17:06:19   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.148.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:06:21   -Performing regression.
2024/02/13 17:06:23   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.149.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:06:26   -Performing regression.
2024/02/13 17:06:28   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.150.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:06:30   -Performing regression.
2024/02/13 17:06:33   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.151.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:06:35   -Performing regression.
2024/02/13 17:06:38   -Reading cts reference panel LD Score from /home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.152.,/home/yunye/tools/ldsc/Multi_tissue_gene_expr_EAS_1000G_v3_ldscores/Franke.EAS.control.[1-22] ... (ldscore_fromlist)
2024/02/13 17:06:40   -Performing regression.
2024/02/13 17:06:43  -Results have been stored in .ldsc_partitioned_h2
2024/02/13 17:06:43 Finished running LD score regression.

In [14]:

t2d.ldsc_h2_cts

t2d.ldsc_h2_cts

Out[14]:

	Name	Coefficient	Coefficient_std_error	Coefficient_P_value
40	Pancreas	9.460678e-09	3.429194e-09	0.002900
186	A03.556.875.Upper.Gastrointestinal.Tract	9.761378e-09	4.007071e-09	0.007425
149	A03.556.124.526.767.Rectum	9.773394e-09	4.053364e-09	0.007950
70	A03.556.249.249.209.Cecum	9.289977e-09	3.977595e-09	0.009757
152	A03.556.875.875.Stomach	8.648790e-09	3.742879e-09	0.010424
...	...	...	...	...
91	A11.329.228.Fibroblasts	-6.156755e-09	2.852965e-09	0.984537
134	A10.615.550.Mucous.Membrane	-6.220756e-09	2.841565e-09	0.985709
18	Brain_Spinal_cord_(cervical_c-1)	-5.433865e-09	2.177073e-09	0.993719
135	A10.690.467.Muscle..Smooth	-7.479103e-09	2.721569e-09	0.997003
55	A07.541.510.110.Aortic.Valve	-7.363194e-09	2.520982e-09	0.998254

205 rows × 4 columns