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GWASTutorial
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Command Line
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Text editing - sed
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Python
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R
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Git and github
Pre-GWAS
Pre-GWAS
Sample Dataset
Data Formats
Genotype Data QC
Sample PCA
Plotting PCA
Phasing
Imputation
GWAS
GWAS
Association tests by PLINK
Visualization by gwaslab
Linear mixed model (LMM)
Whole genome regression by REGENIE
Post-GWAS
Post-GWAS
Annotation by ANNOVAR & VEP
SNP-heritability estimation by GREML
LD socre regression by LDSC
Gene/Gene-set tests by MAGMA
Fine-mapping by susieR
Fine-mapping by susieR
Fine-mapping Basics
Finemapping using susieR
Meta-analysis
Polygenic Risk Score
Polygenic Risk Score
PRS Basics
PRS evaluation
PRS Tutorial
Mendelian randomization
Mendelian randomization
MR Basics
TwoSampleMR Tutorial
Conditional analysis
Colocalization
TWAS (using FUSION)
Topics
Topics
Linkage Disequilibrium (LD)
Heritability Concepts
Statistical power
Winner's curse
Measure of effect
Recommended reading
Assignments
Assignments
Assignment - 1KG PCA
Assignment - Presentation
R Resources
R Programming for Data Science : https://bookdown.org/rdpeng/rprogdatascience/
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