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Japanese in Tokyo, Japan (JPT)

Definition
Curated

Population label used in 1000 Genomes Phase 3 for Japanese in Tokyo, Japan, assigned to the EAS super-population.

Topics
Population genetics Cohorts and databases
Related
1000 Genomes Project Ancestry EAS

Why it matters in GWAS

This label is used to describe reference samples and to interpret ancestry structure, allele-frequency differences, and LD patterns in GWAS analyses.

Example usage

"Reference haplotypes from JPT were included for ancestry benchmarking and imputation panel comparisons."

1000 Genomes Project Ancestry EAS
Related-term network

Click any node to open that term page.

Node order. The current term is first. Next come every page linked from Related terms, in the same top-to-bottom order as that list. Then new terms appear in two-hop layers: for each of those direct neighbors (in that same order), their related terms are appended if not already listed. A third pass does the same for two-hop nodes. The walk stops when a fixed maximum number of nodes is reached.

References

  • 1000 Genomes Project Consortium. (2015). A global reference for human genetic variation. Nature.
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